Protocols - Streamline development of spatial omics analysis tools using SODB!

Tutorial:

• SOView
  • Installation
  • 10x
  • Biancalani2021Deep
  • Dataset5_MS_process
  • Fu2021Unsupervised
  • lohoff2021integration
  • maynard2021trans(151507)
  • maynard2021trans(151671)
  • maynard2021trans(151673)
  • Merfish_Visp
  • moncada2020integrating
  • stahl2016visualization
  • stickels2020highly
  • Sun2021Integrating
  • Wang2018Three_1k
  • Wang2018three
• Spatially variable gene detection
  • Installation
  • Reproducibility with original data
  • Application with new data
• Spatial clustering
  • Installation
  • Reproducibility with original data
  • Application with new data
  • Application with new data (3D)
• Pseudo-spatiotemporal analysis
  • Installation
  • Reproducibility with original data (seqFISH)
  • Reproducibility with original data (DLPFC)
  • Application with new data
• Spatial data integration
  • Installation
  • Reproducibility with original data
  • Application with new data
• Spatial data alignment
  • Installation
  • Reproducibility with original data
  • Application with new data
• Spatial spot deconvolution
  • Installation
  • Reproducibility with original data
  • Application with new data
• Generalizability to more spatial omics data
  • SpatiallyVariableGeneDetection_SpatialGenomicsData
  • SpatiallyVariableGeneDetection_SpatialProteomicsData
  • SpatiallyVariableGeneDetection_SpatialMultiomicsData
  • SpatialClustering_SpatialGenomicsData
  • SpatialClustering_SpatialProteomicsData
  • SpatialClustering_SpatialMetabolomicsData
  • SpatialDataIntegration_SpatialProteomicsData
  • SpatialDataIntegration_SpatialProteomicsData2